PlanTEnrichment is a unique tool that permits enrichment analysis of transposable elements associated with a given gene list. Read more...

How to cite? PlanTEnrichment: a tool for enrichment analysis of transposable elements in plants. (In press)

PeTMBase is a searchable database with 2728 endogenous target mimicry (eTM) sequences predicted computationally from 11 different plant species. It aims to provide a resource for endogenous miRNA target mimics for plants.

How to cite? PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)

RTFAdb RTFAdb is a public repository of the overrepresented retrotransposon species -including long terminal repeat (LTR) retrotransposons, long interspersed elements (LINEs), and short interspersed elements (SINEs)- in the binding sites of the human and mouse transcription factors (TFs).

How to cite? Gökhan Karakülah RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes, Genomics (2017), doi.org/10.1016/j.ygeno.2017.11.002

We are happy to announce the establishment of tools.ibg.deu.edu.tr. This page will keep you up-to-date about the latest bioinformatics tools and resources developed by IBG and other sister projects.