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RTFAdb

RTFAdb is a public repository of the overrepresented retrotransposon species -including long terminal repeat (LTR) retrotransposons, long interspersed elements (LINEs), and short interspersed elements (SINEs)- in the binding sites of the human and mouse transcription factors (TFs). By using over 3000 TF ChIP-Seq profiles retrieved from ENCODE project, RTFAdb provides convenient access to computationally predicted associations between retrotransposons and TFs in the human and mouse genomes. Read more...

How to cite? Gökhan Karakülah RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes, Genomics (2017), doi.org/10.1016/j.ygeno.2017.11.002

Search modules

i. Search by Transcription Factor (TF)

Select a species:

Select a human TF: Select a peak type: Set a p-value threshold:

ii. Search by Retrotransposon

Select a species:

Select a human retrotransposon: Select a peak type: Set a p-value threshold:

Select a mouse retrotransposon: Select a peak type: Set a p-value threshold:

iii. Search by Cell / Tissue type

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RTFAdb

Retrotransposon - Transcription Factor Associations database

RTFAdb

Search modules